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R08C7.8 Serine/threonine-protein phosphatase [ Caenorhabditis elegans ]

Gene ID: 177208, updated on 23-Nov-2023

Summary

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Gene symbol
R08C7.8
Gene description
Serine/threonine-protein phosphatase
Primary source
WormBase:WBGene00019951
Locus tag
CELE_R08C7.8
See related
AllianceGenome:WB:WBGene00019951
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See R08C7.8 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
6
Sequence:
Chromosome: IV; NC_003282.8 (4433049..4434541, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Seven TM Receptor Neighboring gene ATF7IP_BD domain-containing protein Neighboring gene Glycosyltransferase family 92 protein Neighboring gene ncRNA Neighboring gene F-box domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Serine/threonine-protein phosphatase
NP_500563.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    4433049..4434541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068162.5 → NP_500563.2  Serine/threonine-protein phosphatase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500563.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21840
    Conserved Domains (2) summary
    smart00156
    Location:27 → 299
    PP2Ac; Protein phosphatase 2A homologues, catalytic domain
    cd00144
    Location:57 → 286
    MPP_PPP_family; phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version

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