U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C04E12.4 PAW domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178767, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
C04E12.4
Gene description
PAW domain-containing protein
Primary source
WormBase:WBGene00015434
Locus tag
CELE_C04E12.4
See related
AllianceGenome:WB:WBGene00015434
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable hydrolase activity. Predicted to be involved in glycoprotein catabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See C04E12.4 in Genome Data Viewer
Location:
chromosome: V
Exon count:
15
Sequence:
Chromosome: V; NC_003283.11 (3362775..3368344)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Phospholipid scramblase Neighboring gene PAW domain-containing protein Neighboring gene DUF19 domain-containing protein Neighboring gene 7TM GPCR serpentine receptor class x (Srx) domain-containing protein Neighboring gene Serpentine Receptor, class BC (Class B-like)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in glycoprotein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in glycoprotein catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in macromolecule metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in protein deglycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
PAW domain-containing protein
NP_503936.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    3362775..3368344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071535.7 → NP_503936.2  PAW domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503936.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76677, O76678
    Conserved Domains (1) summary
    smart00613
    Location:257 → 344
    PAW; domain present in PNGases and other hypothetical proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Tools