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Klhdc7a kelch domain containing 7A [ Mus musculus (house mouse) ]

Gene ID: 242721, updated on 30-Apr-2024

Summary

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Official Symbol
Klhdc7aprovided by MGI
Official Full Name
kelch domain containing 7Aprovided by MGI
Primary source
MGI:MGI:2444612
See related
Ensembl:ENSMUSG00000078234 AllianceGenome:MGI:2444612
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B230308G19Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and immune system. Orthologous to human KLHDC7A (kelch domain containing 7A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human all
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Genomic context

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Location:
4 D3; 4 71.03 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (139689484..139695337, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (139962173..139968026, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene paired box 7 Neighboring gene predicted gene, 46873 Neighboring gene STARR-seq mESC enhancer starr_11842 Neighboring gene RIKEN cDNA 4933427I22 gene Neighboring gene predicted gene 1667 Neighboring gene STARR-seq mESC enhancer starr_11844 Neighboring gene STARR-seq mESC enhancer starr_11846 Neighboring gene microRNA 2139 Neighboring gene STARR-seq mESC enhancer starr_11847 Neighboring gene immunoglobulin superfamily, member 21 Neighboring gene VISTA enhancer mm1730 Neighboring gene predicted gene, 52685 Neighboring gene STARR-seq mESC enhancer starr_11853 Neighboring gene STARR-seq mESC enhancer starr_11854 Neighboring gene predicted gene 13029

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
kelch domain-containing protein 7A
Names
novel kelch domain containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173427.2 → NP_775603.2  kelch domain-containing protein 7A

    See identical proteins and their annotated locations for NP_775603.2

    Status: VALIDATED

    Source sequence(s)
    AL844480, AW124675
    Consensus CDS
    CCDS38935.1
    UniProtKB/Swiss-Prot
    A2APT9, Q80SV4, Q8C706
    UniProtKB/TrEMBL
    Q8C7K3
    Related
    ENSMUSP00000100648.3, ENSMUST00000105031.4
    Conserved Domains (4) summary
    smart00612
    Location:538 → 585
    Kelch; Kelch domain
    sd00038
    Location:527 → 571
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:574 → 615
    Kelch_1; Kelch motif
    cl06652
    Location:426 → 466
    BACK_like; BTB-And-C-terminal-Kelch (BACK) domain and similar domains

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    139689484..139695337 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2APT9.3 GenPept UniProtKB/Swiss-Prot:A2APT9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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