Format

Send to:

Choose Destination

Actr3b ARP3 actin-related protein 3B [ Mus musculus (house mouse) ]

Gene ID: 242894, updated on 16-Oct-2021

Summary

Official Symbol
Actr3bprovided by MGI
Official Full Name
ARP3 actin-related protein 3Bprovided by MGI
Primary source
MGI:MGI:2661120
See related
Ensembl:ENSMUSG00000056367
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ARP11; Arp3b; AW047569; Arp3beta; 9630005C02
Expression
Biased expression in cortex adult (RPKM 22.5), frontal lobe adult (RPKM 19.1) and 11 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Actr3b in Genome Data Viewer
Location:
5; 5 B1
Exon count:
15
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (25964941..26055689)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (25759941..25850691)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (25265844..25356160)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 2 Neighboring gene predicted gene, 54325 Neighboring gene predicted gene, 42237 Neighboring gene predicted gene, 21655 Neighboring gene predicted gene, 21663

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC91290

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables actin binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to actin filament binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
actin-related protein 3B
Names
ARP3 actin-related protein 3 homolog B
actin-related protein 3-beta

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004365.2NP_001004365.1  actin-related protein 3B isoform 1

    See identical proteins and their annotated locations for NP_001004365.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC116412, BC053106, BC082279, BE994356
    Consensus CDS
    CCDS19136.1
    UniProtKB/Swiss-Prot
    Q641P0
    Related
    ENSMUSP00000085578.5, ENSMUST00000088244.6
    Conserved Domains (2) summary
    COG5277
    Location:1410
    COG5277; Actin-related protein [Cytoskeleton]
    PTZ00280
    Location:2417
    PTZ00280; Actin-related protein 3; Provisional
  2. NM_001310504.1NP_001297433.1  actin-related protein 3B isoform 2

    See identical proteins and their annotated locations for NP_001297433.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the 5' region and initiates translation at a downstream start codon compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
    Source sequence(s)
    AC116412, BC053106, BE994356
    Consensus CDS
    CCDS80232.1
    UniProtKB/Swiss-Prot
    Q641P0
    Related
    ENSMUSP00000121629.2, ENSMUST00000128727.8
    Conserved Domains (1) summary
    PTZ00280
    Location:1329
    PTZ00280; Actin-related protein 3; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    25964941..26055689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535713.5XP_006535776.2  actin-related protein 3B isoform X1

    Conserved Domains (1) summary
    PTZ00280
    Location:2369
    PTZ00280; Actin-related protein 3; Provisional
  2. XM_030254498.2XP_030110358.1  actin-related protein 3B isoform X4

    Conserved Domains (1) summary
    PTZ00280
    Location:1281
    PTZ00280; Actin-related protein 3; Provisional
  3. XM_036165122.1XP_036021015.1  actin-related protein 3B isoform X2

    Conserved Domains (1) summary
    PTZ00280
    Location:1329
    PTZ00280; Actin-related protein 3; Provisional
  4. XM_017320880.3XP_017176369.1  actin-related protein 3B isoform X3

    Conserved Domains (1) summary
    PTZ00280
    Location:1288
    PTZ00280; Actin-related protein 3; Provisional
Support Center