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Zfp354b zinc finger protein 354B [ Mus musculus (house mouse) ]

Gene ID: 27274, updated on 23-Jun-2021

Summary

Official Symbol
Zfp354bprovided by MGI
Official Full Name
zinc finger protein 354Bprovided by MGI
Primary source
MGI:MGI:1351476
See related
Ensembl:ENSMUSG00000020335
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kid; Kid2; Tcf17l1; Znf354b
Expression
Broad expression in CNS E18 (RPKM 1.8), CNS E14 (RPKM 1.3) and 20 other tissues See more
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Genomic context

See Zfp354b in Genome Data Viewer
Location:
11; 11 B1.3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (50812613..50822486, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (50921786..50931661, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (50735288..50745137, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 454 Neighboring gene zinc finger protein 2 Neighboring gene RIKEN cDNA 4933414I15 gene Neighboring gene paired like homeodomain factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Homology

Clone Names

  • MGC130408, MGC130409

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 354B
Names
kidney, ischemia, and developmentally-regulated protein 2
transcription factor 17-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013744.3NP_038772.1  zinc finger protein 354B

    See identical proteins and their annotated locations for NP_038772.1

    Status: VALIDATED

    Source sequence(s)
    AK148756, BC107400
    Consensus CDS
    CCDS24641.1
    UniProtKB/Swiss-Prot
    Q9QXT9
    Related
    ENSMUSP00000104752.4, ENSMUST00000109124.10
    Conserved Domains (6) summary
    smart00349
    Location:1473
    KRAB; krueppel associated box
    COG5048
    Location:182585
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:485505
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:290312
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:1453
    KRAB; KRAB box
    pfam13465
    Location:357382
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    50812613..50822486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030246044.2XP_030101904.1  zinc finger protein 354B isoform X1

    Conserved Domains (1) summary
    smart00349
    Location:1473
    KRAB; krueppel associated box
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