zcchc7 zinc finger, CCHC domain containing 7 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zcchc7provided by ZNC
Official Full Name: zinc finger, CCHC domain containing 7provided by ZNC
Primary source: ZFIN:ZDB-GENE-030102-2
See related: Ensembl:ENSDARG00000055443 AllianceGenome:ZFIN:ZDB-GENE-030102-2
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zcchc7l; chunp6893; flj22611l
Summary: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC7 (zinc finger CCHC-type containing 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (21610249..21714027, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (20917312..21021090, complement)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AW165427 (e-PCR)
- UniSTS:205865

fe01h06.x1 (e-PCR)
- UniSTS:195923

fi14d11.x1 (e-PCR)
- UniSTS:196851

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in TRAMP-dependent tRNA surveillance pathway	IBA Inferred from Biological aspect of Ancestor more info
involved_in nuclear mRNA surveillance of mRNA 3'-end processing	IBA Inferred from Biological aspect of Ancestor more info
involved_in nuclear polyadenylation-dependent CUT catabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in nuclear polyadenylation-dependent rRNA catabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in nuclear polyadenylation-dependent snRNA catabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in nuclear polyadenylation-dependent snoRNA catabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of TRAMP complex	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger CCHC domain-containing protein 7

Names: zinc finger, CCHC domain containing 7- like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001301358.3 → NP_001288287.2 zinc finger CCHC domain-containing protein 7

Status: VALIDATED

Source sequence(s)

BX284619, BX511134, CR786570

UniProtKB/TrEMBL

A0A8M1P1I0, F1QLY2

Related

ENSDARP00000106239.2, ENSDART00000129066.3

Conserved Domains (1) summary

PTZ00368
Location:254 → 396

PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007112.7 Reference GRCz11 Primary Assembly

Range

21610249..21714027 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009307728.3 → XP_009306003.1 zinc finger CCHC domain-containing protein 7 isoform X1

UniProtKB/TrEMBL

A0A8M3B5M8

Conserved Domains (1) summary

PTZ00368
Location:265 → 407

PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional