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ubr7 ubiquitin protein ligase E3 component n-recognin 7 [ Danio rerio (zebrafish) ]

Gene ID: 322815, updated on 27-Mar-2024

Summary

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Official Symbol
ubr7provided by ZNC
Official Full Name
ubiquitin protein ligase E3 component n-recognin 7provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1535
See related
Ensembl:ENSDARG00000005536 AllianceGenome:ZFIN:ZDB-GENE-030131-1535
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb74a06; zgc:55404; wu:fb74a06; wu:fi29b06
Summary
Predicted to enable ligase activity; ubiquitin protein ligase activity; and zinc ion binding activity. Orthologous to human UBR7 (ubiquitin protein ligase E3 component n-recognin 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See ubr7 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (27092665..27107703)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (27193987..27208613)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkeyp-55f12.3 Neighboring gene transmembrane protein 251 Neighboring gene BTB (POZ) domain containing 7 Neighboring gene si:dkey-85n7.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Positive correlation between gene coexpression and positional clustering in the zebrafish genome. Ng YK, et al. BMC Genomics, 2009 Jan 22. PMID 19159490, Free PMC Article
  2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative E3 ubiquitin-protein ligase UBR7
NP_997794.1
XP_021324040.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212629.1 → NP_997794.1  putative E3 ubiquitin-protein ligase UBR7

    See identical proteins and their annotated locations for NP_997794.1

    Status: PROVISIONAL

    Source sequence(s)
    BC044390
    UniProtKB/TrEMBL
    Q803P8
    Related
    ENSDARP00000019360.2, ENSDART00000024595.5
    Conserved Domains (2) summary
    cd15542
    Location:127 → 178
    PHD_UBR7; PHD finger found in putative E3 ubiquitin-protein ligase UBR7
    pfam02207
    Location:49 → 106
    zf-UBR; Putative zinc finger in N-recognin (UBR box)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    27092665..27107703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468365.1 → XP_021324040.1  putative E3 ubiquitin-protein ligase UBR7 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PSI6
    Conserved Domains (2) summary
    cd15542
    Location:127 → 178
    PHD_UBR7; PHD finger found in putative E3 ubiquitin-protein ligase UBR7
    pfam02207
    Location:49 → 106
    zf-UBR; Putative zinc finger in N-recognin (UBR box)
Nucleotide Protein Strain
Heading Accession and Version

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