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zc3h11a zinc finger CCCH-type containing 11A [ Danio rerio (zebrafish) ]

Gene ID: 324551, updated on 27-Mar-2024

Summary

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Official Symbol
zc3h11aprovided by ZNC
Official Full Name
zinc finger CCCH-type containing 11Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3272
See related
Ensembl:ENSDARG00000009754 AllianceGenome:ZFIN:ZDB-GENE-030131-3272
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc32e10; zgc:73328; wu:fc32e10
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Orthologous to human ZC3H11A (zinc finger CCCH-type containing 11A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See zc3h11a in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (24034328..24044586)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (23796472..23806729)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene chitinase, acidic.3 Neighboring gene oviductal glycoprotein 1 Neighboring gene MAF1 homolog, negative regulator of RNA polymerase III a Neighboring gene tribbles pseudokinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 11A
Names
zinc finger CCCH type containing 11A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199686.2 → NP_955980.2  zinc finger CCCH domain-containing protein 11A

    See identical proteins and their annotated locations for NP_955980.2

    Status: VALIDATED

    Source sequence(s)
    CU571319
    UniProtKB/TrEMBL
    A0A8M2BGM4, F1QNW1
    Related
    ENSDARP00000105424.1, ENSDART00000128309.3
    Conserved Domains (2) summary
    smart00356
    Location:7 → 28
    ZnF_C3H1; zinc finger
    pfam15663
    Location:2 → 111
    zf-CCCH_3; Zinc-finger containing family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    24034328..24044586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169254.4 → XP_005169311.1  zinc finger CCCH domain-containing protein 11A isoform X1

    See identical proteins and their annotated locations for XP_005169311.1

    UniProtKB/TrEMBL
    A0A8M2BGM4, F1QNW1
    Conserved Domains (2) summary
    smart00356
    Location:7 → 28
    ZnF_C3H1; zinc finger
    pfam15663
    Location:2 → 111
    zf-CCCH_3; Zinc-finger containing family

  2. XM_005169256.4 → XP_005169313.1  zinc finger CCCH domain-containing protein 11A isoform X1

    See identical proteins and their annotated locations for XP_005169313.1

    UniProtKB/TrEMBL
    A0A8M2BGM4, F1QNW1
    Conserved Domains (2) summary
    smart00356
    Location:7 → 28
    ZnF_C3H1; zinc finger
    pfam15663
    Location:2 → 111
    zf-CCCH_3; Zinc-finger containing family
Nucleotide Protein Strain
Heading Accession and Version

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