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zgc:66474 zgc:66474 [ Danio rerio (zebrafish) ]

Gene ID: 327500, updated on 11-Apr-2024

Summary

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Official Symbol
zgc:66474provided by ZNC
Official Full Name
zgc:66474provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5711
See related
Ensembl:ENSDARG00000026453 AllianceGenome:ZFIN:ZDB-GENE-030131-5711
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi14f02; wu:fi14f02; si:dkey-93n13.1
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See zgc:66474 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (15646191..15667734, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (15486123..15517926, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:dkey-93n13.2 Neighboring gene zinc finger protein 675-like Neighboring gene zgc:66443 Neighboring gene proline-rich transmembrane protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC327500
Names
zinc finger protein 726-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199815.1 → NP_956109.1  uncharacterized protein LOC327500

    See identical proteins and their annotated locations for NP_956109.1

    Status: PREDICTED

    Source sequence(s)
    BC057537
    UniProtKB/TrEMBL
    Q6PFI5
    Related
    ENSDARP00000011194.7, ENSDART00000026658.9
    Conserved Domains (4) summary
    sd00017
    Location:372 → 392
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:593 → 615
    zf-C2H2; Zinc finger, C2H2 type
    cl21478
    Location:462 → 541
    ATP-synt_B; ATP synthase B/B' CF(0)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    15646191..15667734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005163801.4 → XP_005163858.1  uncharacterized protein LOC327500 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BAX5
    Conserved Domains (3) summary
    sd00017
    Location:27 → 47
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:343 → 363
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:248 → 270
    zf-C2H2; Zinc finger, C2H2 type

  2. XM_005163802.4 → XP_005163859.1  uncharacterized protein LOC327500 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BB17, F1RDM3
    Related
    ENSDARP00000099289.2, ENSDART00000115022.4
    Conserved Domains (2) summary
    smart00614
    Location:362 → 408
    ZnF_BED; BED zinc finger
    sd00017
    Location:176 → 196
    ZF_C2H2; C2H2 Zn finger [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394524.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    309260..312848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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