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ccdc6a coiled-coil domain containing 6a [ Danio rerio (zebrafish) ]

Gene ID: 335905, updated on 27-Mar-2024

Summary

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Official Symbol
ccdc6aprovided by ZNC
Official Full Name
coiled-coil domain containing 6aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7848
See related
Ensembl:ENSDARG00000043334 AllianceGenome:ZFIN:ZDB-GENE-030131-7848
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ccdc6; fj36e04; zgc:56563; zgc:77435; wu:fj36e04
Summary
Is expressed in female organism. Orthologous to human CCDC6 (coiled-coil domain containing 6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (20673963..20695898, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (20654127..20676062, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene neuropeptide Y receptor Y4 Neighboring gene solute carrier family 16 member 9a Neighboring gene ankyrin 3a Neighboring gene cyclin dependent kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Origin of the prolactin-releasing hormone (PRLH) receptors: evidence of coevolution between PRLH and a redundant neuropeptide Y receptor during vertebrate evolution. Lagerström MC, et al. Genomics, 2005 Jun. PMID 15885496
  2. Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production. Newman M, et al. Mol Brain, 2019 May 3. PMID 31053140, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 6a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199985.2 → NP_956279.1  coiled-coil domain-containing protein 6a

    See identical proteins and their annotated locations for NP_956279.1

    Status: PROVISIONAL

    Source sequence(s)
    BC065606
    UniProtKB/TrEMBL
    A0A0R4IQ30, F6P7W4, Q7ZUC4
    Related
    ENSDARP00000063612.6, ENSDART00000063613.8
    Conserved Domains (2) summary
    pfam09755
    Location:49 → 334
    DUF2046; Uncharacterized conserved protein H4 (DUF2046)
    cl00259
    Location:115 → 204
    Sm_like; Sm and related proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    20673963..20695898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394983.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    15592..37527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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