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jac1 jacalin 1 [ Danio rerio (zebrafish) ]

Gene ID: 336485, updated on 27-Mar-2024

Summary

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Official Symbol
jac1provided by ZNC
Official Full Name
jacalin 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8429
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-8429
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb11f10; wu:fb11f10; si:dkeyp-32g11.7
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Genomic context

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See jac1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (8415487..8417388, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (8169529..8171339, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene jacalin 10 Neighboring gene jacalin 11 Neighboring gene natterin-like protein Neighboring gene si:dkeyp-32g11.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolutionary analysis of the jacalin-related lectin family genes in 11 fishes. Cao J, et al. Fish Shellfish Immunol, 2016 Sep. PMID 27514782
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
natterin-like protein; uncharacterized protein LOC336485

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    8415487..8417388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166359.4 → XP_005166416.2  natterin-like protein isoform X2

    UniProtKB/TrEMBL
    A0A140LGS3, A0A8M2BDT1
    Conserved Domains (2) summary
    cd09302
    Location:61 → 185
    Jacalin_like; Jacalin-like lectin domain
    cl03107
    Location:203 → 331
    ETX_MTX2; Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2

  2. XM_021477701.1 → XP_021333376.1  natterin-like protein isoform X1

    UniProtKB/TrEMBL
    A0A140LGS3, A0A8M9QCF5
    Conserved Domains (2) summary
    cd09302
    Location:62 → 186
    Jacalin_like; Jacalin-like lectin domain
    cl03107
    Location:204 → 332
    ETX_MTX2; Clostridium epsilon toxin ETX/Bacillus mosquitocidal toxin MTX2
Nucleotide Protein
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