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Zcchc14 zinc finger CCHC-type containing 14 [ Rattus norvegicus (Norway rat) ]

Gene ID: 365018, updated on 13-Apr-2024

Summary

Official Symbol
Zcchc14provided by RGD
Official Full Name
zinc finger CCHC-type containing 14provided by RGD
Primary source
RGD:1309494
See related
Ensembl:ENSRNOG00000018226 AllianceGenome:RGD:1309494
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309494
Summary
Predicted to enable nucleic acid binding activity; phosphatidylinositol binding activity; and zinc ion binding activity. Orthologous to human ZCCHC14 (zinc finger CCHC-type containing 14). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 118.6), Lung (RPKM 116.3) and 9 other tissues See more
Orthologs
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Genomic context

See Zcchc14 in Genome Data Viewer
Location:
19q12
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (66582800..66627136, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (49674185..49718004, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (53644500..53688624, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) 13 Neighboring gene microtubule-associated protein 1 light chain 3 beta Neighboring gene uncharacterized LOC134483656 Neighboring gene uncharacterized LOC102550418 Neighboring gene small nucleolar RNA SNORA72

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
zinc finger CCHC domain-containing protein 14
Names
zinc finger, CCHC domain containing 14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427306.1NP_001414235.1  zinc finger CCHC domain-containing protein 14

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    UniProtKB/TrEMBL
    M0R4K3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    66582800..66627136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039098193.1XP_038954121.1  zinc finger CCHC domain-containing protein 14 isoform X2

    Conserved Domains (2) summary
    cd09558
    Location:413477
    SAM_ZCCH14; SAM domain of ZCCH14 subfamily
    smart00343
    Location:10221037
    ZnF_C2HC; zinc finger
  2. XM_006255732.3XP_006255794.1  zinc finger CCHC domain-containing protein 14 isoform X1

    Conserved Domains (4) summary
    cd09558
    Location:437501
    SAM_ZCCH14; SAM domain of ZCCH14 subfamily
    smart00454
    Location:444495
    SAM; Sterile alpha motif
    pfam00098
    Location:10461061
    zf-CCHC; Zinc knuckle
    cl02563
    Location:261342
    PX_domain; The Phox Homology domain, a phosphoinositide binding module