tmem254 transmembrane protein 254 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tmem254provided by ZNC
Official Full Name: transmembrane protein 254provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1348
See related: Ensembl:ENSDARG00000109902 AllianceGenome:ZFIN:ZDB-GENE-040426-1348
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:64043
Summary: Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; cranial ganglion; and trigeminal placode. Orthologous to human TMEM254 (transmembrane protein 254). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (52081051..52089139, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (51735363..51743451, complement)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj36e07.y1 (e-PCR)
- UniSTS:199216

fj03e12.y1 (e-PCR)
- UniSTS:204624

fb24d06.x1 (e-PCR)
- UniSTS:190337

fb24d06.x1 (e-PCR)
- UniSTS:190338

fd22b07.y1 (e-PCR)
- UniSTS:195273

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transmembrane protein 254

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200370.2 → NP_956664.2 transmembrane protein 254

Status: VALIDATED

Source sequence(s)

CABZ01089780

UniProtKB/TrEMBL

Q7T380

Related

ENSDARP00000151499.1, ENSDART00000187600.1

Conserved Domains (1) summary

pfam14934
Location:27 → 112

DUF4499; Domain of unknown function (DUF4499)