eif3ja eukaryotic translation initiation factor 3, subunit Ja [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: eif3japrovided by ZNC
Official Full Name: eukaryotic translation initiation factor 3, subunit Japrovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1266
See related: Ensembl:ENSDARG00000012603 AllianceGenome:ZFIN:ZDB-GENE-040426-1266
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: eif3j; eif3s1; fb48g07; zgc:63801; wu:fb48g07
Summary: Predicted to enable translation initiation factor activity. Predicted to be involved in formation of cytoplasmic translation initiation complex. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human EIF3J (eukaryotic translation initiation factor 3 subunit J). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 25

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (31900825..31907654, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (31489864..31496693, complement)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fd55b09.x1 (e-PCR)
- UniSTS:195651

fc38d09.x1 (e-PCR)
- UniSTS:188091

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables translation initiation factor activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in formation of cytoplasmic translation initiation complex	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within translation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within translational initiation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
part_of eukaryotic 43S preinitiation complex	IEA Inferred from Electronic Annotation more info
part_of eukaryotic 48S preinitiation complex	IEA Inferred from Electronic Annotation more info
part_of eukaryotic translation initiation factor 3 complex	IBA Inferred from Biological aspect of Ancestor more info
part_of eukaryotic translation initiation factor 3 complex	IEA Inferred from Electronic Annotation more info
part_of eukaryotic translation initiation factor 3 complex	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: eukaryotic translation initiation factor 3 subunit J-A

Names: eukaryotic translation initiation factor 3, subunit 1 alpha; eukaryotic translation initiation factor 3, subunit J

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_201214.2 → NP_957508.2 eukaryotic translation initiation factor 3 subunit J-A

Status: VALIDATED

Source sequence(s)

CU694372

UniProtKB/Swiss-Prot

Q7SXU0

Related

ENSDARP00000124801.1, ENSDART00000149471.3

Conserved Domains (1) summary

pfam08597
Location:5 → 249

eIF3_subunit; Translation initiation factor eIF3 subunit