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LOC401312 uncharacterized LOC401312 [ Homo sapiens (human) ]

Gene ID: 401312, updated on 10-Oct-2023

Summary

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Gene symbol
LOC401312
Gene description
uncharacterized LOC401312
See related
Ensembl:ENSG00000105889
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.3) See more
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Genomic context

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Location:
7p15.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (22649960..22665533, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (22785836..22801408, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (22689579..22705152, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:22602981-22603482 Neighboring gene STEAP1B antisense RNA 1 Neighboring gene CAGE-defined low expression enhancer in LOC100506178-LOC401312 intergenic region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:22703992-22704599 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:22704600-22705208 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:22705209-22705815 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:22708433-22709061 Neighboring gene Sharpr-MPRA regulatory region 4516 Neighboring gene CRISPRi-validated cis-regulatory element chr7.1154 Neighboring gene CRISPRi-validated cis-regulatory element chr7.1155 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:22748460-22749096 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18003 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:22766269-22767468 Neighboring gene IL6 antisense RNA 1 Neighboring gene interleukin 6 Neighboring gene MT-CYB pseudogene 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • AC002480.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_122075.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002480, BC042871
    Related
    ENST00000414116.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    22649960..22665533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    22785836..22801408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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