slc25a19 solute carrier family 25 member 19 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc25a19provided by ZNC
Official Full Name: solute carrier family 25 member 19provided by ZNC
Primary source: ZFIN:ZDB-GENE-050417-292
See related: Ensembl:ENSDARG00000100385 AllianceGenome:ZFIN:ZDB-GENE-050417-292
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:111878
Summary: Predicted to enable thiamine transmembrane transporter activity. Predicted to be involved in thiamine pyrophosphate transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Human ortholog(s) of this gene implicated in inherited metabolic disorder and microcephaly. Orthologous to human SLC25A19 (solute carrier family 25 member 19). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (13487759..13509317, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (13337647..13363285, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables thiamine pyrophosphate transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables thiamine transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in thiamine pyrophosphate transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in mitochondrial inner membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: mitochondrial thiamine pyrophosphate carrier

Names: solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205715.1 → NP_991278.1 mitochondrial thiamine pyrophosphate carrier

See identical proteins and their annotated locations for NP_991278.1

Status: PROVISIONAL

Source sequence(s)

AY394951

UniProtKB/TrEMBL

Q6TLF4

Related

ENSDARP00000130698.1, ENSDART00000166832.3

Conserved Domains (2) summary

PTZ00169
Location:20 → 290

PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional

pfam00153
Location:117 → 203

Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007114.7 Reference GRCz11 Primary Assembly

Range

13487759..13509317 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021469945.1 → XP_021325620.1 mitochondrial thiamine pyrophosphate carrier isoform X1

UniProtKB/TrEMBL

A0A8M9PWT9

Conserved Domains (1) summary

pfam00153
Location:117 → 203

Mito_carr; Mitochondrial carrier protein