U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

eef1a1l3 eukaryotic translation elongation factor 1 alpha 1, like 3 [ Danio rerio (zebrafish) ]

Gene ID: 407641, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
eef1a1l3provided by ZNC
Official Full Name
eukaryotic translation elongation factor 1 alpha 1, like 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5667
See related
Ensembl:ENSDARG00000071727 AllianceGenome:ZFIN:ZDB-GENE-030131-5667
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi12b10; wu:fi12b10; si:dkey-37o8.1
Summary
Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See eef1a1l3 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (10898671..10901351)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (10758304..10760984)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene si:ch211-69l10.2 Neighboring gene family with sequence similarity 49 member Bb Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 1b Neighboring gene microRNA mir-7147 Neighboring gene GTPase IMAP family member 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A proteomics approach identifies novel resident zebrafish Balbiani body proteins Cirbpa and Cirbpb. Jamieson-Lucy AH, et al. Dev Biol, 2022 Apr. PMID 35065906, Free PMC Article
  2. Transcriptomic analyses reveal novel genes with sexually dimorphic expression in the zebrafish gonad and brain. Sreenivasan R, et al. PLoS One, 2008 Mar 12. PMID 18335061, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables translation elongation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
involved_in translational elongation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within translational elongation IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Elongation factor 1-alpha-like
Names
eukaryotic translation elongation factor 1 alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163994.1 → NP_001157466.1  Elongation factor 1-alpha-like

    Status: VALIDATED

    Source sequence(s)
    BC049512, DY570803, EH556069, EH569396
    UniProtKB/TrEMBL
    A0A8M1NS15, Q7ZWA1
    Related
    ENSDARP00000097050.3, ENSDART00000106272.4
    Conserved Domains (4) summary
    PTZ00141
    Location:1 → 458
    PTZ00141; elongation factor 1- alpha; Provisional
    cd01883
    Location:9 → 239
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    cd03693
    Location:244 → 332
    EF1_alpha_II; Domain II of elongation factor 1-alpha
    cd03705
    Location:337 → 438
    EF1_alpha_III; Domain III of Elongation Factor 1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    10898671..10901351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools