sccpdhb saccharopine dehydrogenase b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: sccpdhbprovided by ZNC
Official Full Name: saccharopine dehydrogenase bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-041010-211
See related: Ensembl:ENSDARG00000024564 AllianceGenome:ZFIN:ZDB-GENE-041010-211
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb4; sb:cb4; zgc:101527
Summary: Predicted to enable oxidoreductase activity. Predicted to be involved in glycolipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet. Is expressed in neural tube; primary neurons; and spinal cord. Orthologous to human SCCPDH (saccharopine dehydrogenase (putative)). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 20

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (34967423..34985555, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (35064544..35082676, complement)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in glycolipid biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in lipid droplet	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: saccharopine dehydrogenase b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001005574.1 → NP_001005574.1 saccharopine dehydrogenase b

See identical proteins and their annotated locations for NP_001005574.1

Status: PROVISIONAL

Source sequence(s)

BC083193

UniProtKB/TrEMBL

Q5XJV1

Related

ENSDARP00000035945.4, ENSDART00000037065.6

Conserved Domains (2) summary

COG3268
Location:6 → 427

COG3268; Uncharacterized conserved protein, related to short-chain dehydrogenases [Function unknown]

pfam03435
Location:14 → 151

Sacchrp_dh_NADP; Saccharopine dehydrogenase NADP binding domain