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TRPC6 transient receptor potential cation channel subfamily C member 6 [ Gallus gallus (chicken) ]

Gene ID: 418989, updated on 5-Mar-2024

Summary

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Symbol
TRPC6provided by CGNC
Full Name
transient receptor potential cation channel subfamily C member 6provided by CGNC
Primary source
CGNC:12918
See related
Ensembl:ENSGALG00010007455
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TRPC6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (182891890..182987053)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (182940018..183034704)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix protein 2-like Neighboring gene uncharacterized LOC121107267 Neighboring gene G2/M phase-specific E3 ubiquitin-protein ligase-like Neighboring gene uncharacterized LOC121107270 Neighboring gene progesterone receptor Neighboring gene Rho GTPase activating protein 42 Neighboring gene transfer RNA proline (anticodon AGG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    182891890..182987053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004938840.5 → XP_004938897.4  short transient receptor potential channel 6 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XUZ1, A0A8V0XXR1
    Related
    ENSGALP00010009820.1, ENSGALT00010017781.1
    Conserved Domains (2) summary
    TIGR00870
    Location:130 → 919
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:180 → 207
    ANK; ANK repeat [structural motif]

  2. XM_040650423.2 → XP_040506357.1  short transient receptor potential channel 6 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y0R7
    Related
    ENSGALP00010009819.1, ENSGALT00010017779.1
    Conserved Domains (2) summary
    TIGR00870
    Location:130 → 843
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:180 → 207
    ANK; ANK repeat [structural motif]

  3. XM_417184.7 → XP_417184.4  short transient receptor potential channel 6 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PFG9, A0A8V0XXQ6
    Related
    ENSGALP00010009818.1, ENSGALT00010017778.1
    Conserved Domains (2) summary
    TIGR00870
    Location:73 → 862
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:123 → 150
    ANK; ANK repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    182940018..183034704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040658557.2 → XP_040514491.1  short transient receptor potential channel 6 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XXR1
    Conserved Domains (2) summary
    TIGR00870
    Location:130 → 919
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:180 → 207
    ANK; ANK repeat [structural motif]

  2. XM_040658559.2 → XP_040514493.1  short transient receptor potential channel 6 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y0R7
    Conserved Domains (2) summary
    TIGR00870
    Location:130 → 843
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:180 → 207
    ANK; ANK repeat [structural motif]

  3. XM_040658558.2 → XP_040514492.1  short transient receptor potential channel 6 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PFG9, A0A8V0XXQ6
    Conserved Domains (2) summary
    TIGR00870
    Location:73 → 862
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:123 → 150
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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