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TRPC5 transient receptor potential cation channel subfamily C member 5 [ Gallus gallus (chicken) ]

Gene ID: 422337, updated on 5-Mar-2024

Summary

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Symbol
TRPC5provided by CGNC
Full Name
transient receptor potential cation channel subfamily C member 5provided by CGNC
Primary source
CGNC:6033
See related
Ensembl:ENSGALG00010013917
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TRPC5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (13009510..13105744)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (13043666..13138744)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene angiomotin Neighboring gene uncharacterized LOC121110632 Neighboring gene ALG13, UDP-N-acetylglucosaminyltransferase subunit Neighboring gene serine rich and transmembrane domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    13009510..13105744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_420310.8 → XP_420310.3  short transient receptor potential channel 5

    UniProtKB/TrEMBL
    A0A8V0YFR1
    Related
    ENSGALP00010019683.1, ENSGALT00010033355.1
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 757
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:69 → 120
    ANK; ANK repeat [structural motif]

  2. XM_046940503.1 → XP_046796459.1  short transient receptor potential channel 5

    UniProtKB/TrEMBL
    A0A8V0YFR1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    13043666..13138744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046917325.1 → XP_046773281.1  short transient receptor potential channel 5

    UniProtKB/TrEMBL
    A0A8V0YFR1

  2. XM_040670576.2 → XP_040526510.1  short transient receptor potential channel 5

    UniProtKB/TrEMBL
    A0A8V0YFR1
    Conserved Domains (2) summary
    TIGR00870
    Location:17 → 757
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:69 → 120
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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