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TRAF3IP1 ubiquitin specific peptidase 40 [ Gallus gallus (chicken) ]

Gene ID: 424029, updated on 3-Apr-2024

Summary

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Official Symbol
TRAF3IP1provided by CGNC
Official Full Name
ubiquitin specific peptidase 40provided by CGNC
Primary source
CGNC:3107
See related
Ensembl:ENSGALG00010015025
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See TRAF3IP1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (5976172..6012900)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (5917475..5954299)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene UDP glucuronosyltransferase family 1 member A1 Neighboring gene UDP-glucuronosyltransferase 1-9-like Neighboring gene UDP-glucuronosyltransferase 1A9-like Neighboring gene ubiquitin specific peptidase 40 Neighboring gene uncharacterized LOC121111297 Neighboring gene ankyrin repeat and SOCS box containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TRAF3-interacting protein 1
Names
NF receptor-associated factor 3 interacting protein 1
TNF receptor-associated factor 3 interacting protein 1
TRAF3 interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5976172..6012900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004942511.4 → XP_004942568.3  TRAF3-interacting protein 1 isoform X2

    Related
    ENSGALP00010020985.1, ENSGALT00010036126.1

  2. XM_003641562.5 → XP_003641610.4  TRAF3-interacting protein 1 isoform X3

    Related
    ENSGALP00010020989.1, ENSGALT00010036130.1

  3. XM_046944025.1 → XP_046799981.1  TRAF3-interacting protein 1 isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5917475..5954299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040676368.2 → XP_040532302.1  TRAF3-interacting protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YQR1
    Conserved Domains (2) summary
    PRK12678
    Location:148 → 327
    PRK12678; transcription termination factor Rho; Provisional
    TIGR01622
    Location:239 → 450
    SF-CC1; splicing factor, CC1-like family

  2. XM_040676369.2 → XP_040532303.1  TRAF3-interacting protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YSD5
    Conserved Domains (2) summary
    PTZ00121
    Location:136 → 655
    PTZ00121; MAEBL; Provisional
    PRK12678
    Location:148 → 327
    PRK12678; transcription termination factor Rho; Provisional

  3. XM_046921856.1 → XP_046777812.1  TRAF3-interacting protein 1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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