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gdpd1 glycerophosphodiester phosphodiesterase domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 445504, updated on 27-Mar-2024

Summary

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Official Symbol
gdpd1provided by ZNC
Official Full Name
glycerophosphodiester phosphodiesterase domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040822-22
See related
Ensembl:ENSDARG00000017261 AllianceGenome:ZFIN:ZDB-GENE-040822-22
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb95e09; zgc:101097
Summary
Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Predicted to be involved in N-acylethanolamine metabolic process and glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human GDPD1 (glycerophosphodiester phosphodiesterase domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (16886165..16894879)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (16950063..16958853)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) Neighboring gene transmembrane protein 120Ab Neighboring gene yippee-like 2b Neighboring gene huntingtin interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Morphological and molecular evidence for functional organization along the rostrocaudal axis of the adult zebrafish intestine. Wang Z, et al. BMC Genomics, 2010 Jun 22. PMID 20565988, Free PMC Article
  2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables lysophospholipase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphoric diester hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in glycerophospholipid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lysophospholipase D GDPD1; glycerophosphodiester phosphodiesterase domain-containing protein 1
NP_001004118.1
XP_005157477.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004118.1 → NP_001004118.1  lysophospholipase D GDPD1

    See identical proteins and their annotated locations for NP_001004118.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080230
    UniProtKB/TrEMBL
    A0A8M2B476, Q68EJ8
    Related
    ENSDARP00000049195.6, ENSDART00000049196.7
    Conserved Domains (2) summary
    cd08612
    Location:12 → 310
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
    COG0584
    Location:41 → 307
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    16886165..16894879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005157420.4 → XP_005157477.1  glycerophosphodiester phosphodiesterase domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005157477.1

    UniProtKB/TrEMBL
    A0A8M2B476, Q68EJ8
    Conserved Domains (2) summary
    cd08612
    Location:12 → 310
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
    COG0584
    Location:41 → 307
    UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394943.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    7410..15902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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