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fam43b family with sequence similarity 43 member B [ Danio rerio (zebrafish) ]

Gene ID: 447808, updated on 27-Mar-2024

Summary

Official Symbol
fam43bprovided by ZNC
Official Full Name
family with sequence similarity 43 member Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040912-11
See related
Ensembl:ENSDARG00000070222 AllianceGenome:ZFIN:ZDB-GENE-040912-11
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:92105
Summary
Acts upstream of or within vasculature development. Is expressed in forebrain; somite border; and vasculature. Orthologous to human FAM43B (family with sequence similarity 43 member B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See fam43b in Genome Data Viewer
Location:
chromosome: 23
Exon count:
1
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (37323962..37325961)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (37221300..37223299)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin-dependent protein kinase II inhibitor 1b Neighboring gene mitochondrial E3 ubiquitin protein ligase 1 Neighboring gene uncharacterized LOC108181458 Neighboring gene zmp:0000001088 Neighboring gene uncharacterized LOC101884801

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within vasculature development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
protein FAM43B
Names
TUF1
somitovasculin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004547.1NP_001004547.1  protein FAM43B

    See identical proteins and their annotated locations for NP_001004547.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081596
    UniProtKB/TrEMBL
    Q66I09
    Related
    ENSDARP00000093655.1, ENSDART00000102881.2
    Conserved Domains (1) summary
    cl17171
    Location:71254
    PH-like; Pleckstrin homology-like domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    37323962..37325961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)