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fip1l1b FIP1 like 1b (S. cerevisiae) [ Danio rerio (zebrafish) ]

Gene ID: 450021, updated on 27-Mar-2024

Summary

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Official Symbol
fip1l1bprovided by ZNC
Official Full Name
FIP1 like 1b (S. cerevisiae)provided by ZNC
Primary source
ZFIN:ZDB-GENE-041010-138
See related
Ensembl:ENSDARG00000070431 AllianceGenome:ZFIN:ZDB-GENE-041010-138
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fip1l1; wu:fd36f11; zgc:103421
Summary
Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA polyadenylation and pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human FIP1L1 (factor interacting with PAPOLA and CPSF1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See fip1l1b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (14382797..14403687)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (13696286..13717174)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene collapsin response mediator protein 1 Neighboring gene D(1) dopamine receptor-like Neighboring gene OCIA domain-containing protein 1-like Neighboring gene cysteine-rich hydrophobic domain 2 Neighboring gene solute carrier family 34 member 2a antisense Neighboring gene solute carrier family 34 member 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Expression of zebrafish cxcl8 (interleukin-8) and its receptors during development and in response to immune stimulation. Oehlers SH, et al. Dev Comp Immunol, 2010 Mar. PMID 19941893
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC173769

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pre-mRNA 3'-end-processing factor FIP1
Names
FIP1 like 1
FIP1-like 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006042.1 → NP_001006042.1  pre-mRNA 3'-end-processing factor FIP1

    See identical proteins and their annotated locations for NP_001006042.1

    Status: PROVISIONAL

    Source sequence(s)
    BC083370
    UniProtKB/Swiss-Prot
    Q5XJD3
    UniProtKB/TrEMBL
    B2GRL3
    Related
    ENSDARP00000094123.2, ENSDART00000103346.5
    Conserved Domains (1) summary
    pfam05182
    Location:163 → 205
    Fip1; Fip1 motif

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    14382797..14403687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009306690.2 → XP_009304965.1  pre-mRNA 3'-end-processing factor FIP1 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B4M9
    Conserved Domains (1) summary
    pfam05182
    Location:163 → 205
    Fip1; Fip1 motif

  2. XM_009306697.2 → XP_009304972.1  pre-mRNA 3'-end-processing factor FIP1 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AYF7
    Conserved Domains (1) summary
    pfam05182
    Location:163 → 205
    Fip1; Fip1 motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XJD3.1 GenPept UniProtKB/Swiss-Prot:Q5XJD3

Gene LinkOut

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