SPON1 spondin 1 [Pan troglodytes (chimpanzee)] - Gene

Summary

Gene symbol: SPON1
Gene description: spondin 1
Locus tag: CK820_G0005712
See related: Ensembl:ENSPTRG00000043466
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	9	NC_072407.2 (18057936..18360574)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	11	NC_072409.1 (17934696..18237131)

Chromosome 9 - NC_072407.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

L17751 (e-PCR)
- UniSTS:10240

WI-13844 (e-PCR)
- UniSTS:325

G20587 (e-PCR)
- UniSTS:61781

A005Y02 (e-PCR)
- UniSTS:61782

SPON1__5298 (e-PCR)
- UniSTS:464560

D11S1307 (e-PCR), detects polymorphism
- UniSTS:82627

RH77989 (e-PCR)
- UniSTS:11722

WI-18553 (e-PCR)
- UniSTS:63713

HSCZTB102 (e-PCR)
- UniSTS:63714

D11S2338 (e-PCR)
- UniSTS:44771

D11S1307 (e-PCR), detects polymorphism
- UniSTS:74983

SHGC-78889 (e-PCR)
- UniSTS:95727

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in cell adhesion	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular matrix	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: spondin-1

Names: spondin 1, extracellular matrix protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

18057936..18360574

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_508295.7 → XP_508295.3 spondin-1

Related

ENSPTRP00000083474.1

Conserved Domains (3) summary

cd08544
Location:170 → 309

Reeler; Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins

pfam00090
Location:689 → 737

TSP_1; Thrombospondin type 1 domain

pfam06468
Location:332 → 519

Spond_N; Spondin_N