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trim35-29 tripartite motif containing 35-29 [ Danio rerio (zebrafish) ]

Gene ID: 492475, updated on 27-Mar-2024

Summary

Official Symbol
trim35-29provided by ZNC
Official Full Name
tripartite motif containing 35-29provided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-35
See related
Ensembl:ENSDARG00000055730 AllianceGenome:ZFIN:ZDB-GENE-041114-35
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:103481
Summary
Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM35 (tripartite motif containing 35). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See trim35-29 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (26846495..26849174)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (26973053..26975732)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene INO80 complex subunit C Neighboring gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 Neighboring gene uncharacterized LOC100333085

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
tripartite motif containing 35-29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007347.1NP_001007348.1  tripartite motif containing 35-29

    See identical proteins and their annotated locations for NP_001007348.1

    Status: PROVISIONAL

    Source sequence(s)
    BC085530
    UniProtKB/TrEMBL
    A0A8M1N3C6, Q5U3I5
    Related
    ENSDARP00000072586.5, ENSDART00000078124.6
    Conserved Domains (4) summary
    cd00021
    Location:86123
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd00162
    Location:1455
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam13863
    Location:142232
    DUF4200; Domain of unknown function (DUF4200)
    cl02614
    Location:289378
    SPRY; SPRY domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    26846495..26849174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)