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svopl SVOP-like [ Danio rerio (zebrafish) ]

Gene ID: 492766, updated on 27-Mar-2024

Summary

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Official Symbol
svoplprovided by ZNC
Official Full Name
SVOP-likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-041114-109
See related
Ensembl:ENSDARG00000057983 AllianceGenome:ZFIN:ZDB-GENE-041114-109
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:101741
Summary
Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hatching gland; myotome; pectoral fin musculature; polster; and somite. Orthologous to human SVOPL (SVOP like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See svopl in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (9769046..9781183, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (9768130..9780216, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 3b Neighboring gene uncharacterized LOC103910414 Neighboring gene si:dkeyp-27e10.3 Neighboring gene poly (ADP-ribose) polymerase family, member 12b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Characteristics of 29 novel atypical solute carriers of major facilitator superfamily type: evolutionary conservation, predicted structure and neuronal co-expression. Perland E, et al. Open Biol, 2017 Sep. PMID 28878041, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative transporter SVOPL
Names
SVOP-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007407.2 → NP_001007408.2  putative transporter SVOPL

    See identical proteins and their annotated locations for NP_001007408.2

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    BX649444
    UniProtKB/Swiss-Prot
    Q1LVS8, Q5U3R1
    UniProtKB/TrEMBL
    A0A8M9QB66
    Related
    ENSDARP00000125241.1, ENSDART00000150664.3
    Conserved Domains (1) summary
    cl26863
    Location:49 → 504
    Sugar_tr; Sugar (and other) transporter

  2. NM_001045229.1 → NP_001038694.1  putative transporter SVOPL

    See identical proteins and their annotated locations for NP_001038694.1

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    BX649444
    UniProtKB/Swiss-Prot
    Q1LVS8, Q5U3R1
    UniProtKB/TrEMBL
    A0A8M9QB66
    Related
    ENSDARP00000075190.6, ENSDART00000080744.8
    Conserved Domains (1) summary
    cl26863
    Location:49 → 504
    Sugar_tr; Sugar (and other) transporter

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    9769046..9781183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021475010.1 → XP_021330685.1  putative transporter SVOPL isoform X1

    UniProtKB/Swiss-Prot
    Q1LVS8, Q5U3R1
    UniProtKB/TrEMBL
    A0A8M9QB66
    Conserved Domains (1) summary
    cl26863
    Location:49 → 504
    Sugar_tr; Sugar (and other) transporter

  2. XM_017355009.2 → XP_017210498.1  putative transporter SVOPL isoform X1

    UniProtKB/Swiss-Prot
    Q1LVS8, Q5U3R1
    UniProtKB/TrEMBL
    A0A8M9QB66
    Conserved Domains (1) summary
    cl26863
    Location:49 → 504
    Sugar_tr; Sugar (and other) transporter

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395230.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    190725..202826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1LVS8.1 GenPept UniProtKB/Swiss-Prot:Q1LVS8

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