fubp3 far upstream element (FUSE) binding protein 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: fubp3provided by ZNC
Official Full Name: far upstream element (FUSE) binding protein 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-041121-12
See related: Ensembl:ENSDARG00000086896 AllianceGenome:ZFIN:ZDB-GENE-041121-12
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:101598
Summary: Predicted to enable RNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human FUBP3 (far upstream element binding protein 3). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: suggests misassembly; Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (872289..917451)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (853596..881484)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: far upstream element-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001007776.1 → NP_001007777.1 far upstream element-binding protein 3

See identical proteins and their annotated locations for NP_001007777.1

Status: PROVISIONAL

Source sequence(s)

BC085379

UniProtKB/TrEMBL

Q5RKQ3

Related

ENSDARP00000111831.3, ENSDART00000130042.3

Conserved Domains (2) summary

cd00105
Location:85 → 147

KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

pfam09005
Location:535 → 557

DUF1897; Domain of unknown function (DUF1897)