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ccdc106b coiled-coil domain containing 106b [ Danio rerio (zebrafish) ]

Gene ID: 503711, updated on 27-Mar-2024

Summary

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Official Symbol
ccdc106bprovided by ZNC
Official Full Name
coiled-coil domain containing 106bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050306-6
See related
Ensembl:ENSDARG00000058578 AllianceGenome:ZFIN:ZDB-GENE-050306-6
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ccdc106; im:6909208; zgc:113396
Summary
Predicted to be active in nucleoplasm. Orthologous to human CCDC106 (coiled-coil domain containing 106). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See ccdc106b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (10325367..10331024, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (10406240..10411938, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex, subunit 3b Neighboring gene U2 small nuclear RNA auxiliary factor 2b Neighboring gene transmembrane protein 238a Neighboring gene recoverin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Early depletion of primordial germ cells in zebrafish promotes testis formation. Tzung KW, et al. Stem Cell Reports, 2015 Jan 13. PMID 25434820, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
coiled-coil domain containing 106b; coiled-coil domain-containing protein 106b
Names
coiled-coil domain containing 106

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013305.2 → NP_001013323.2  coiled-coil domain-containing protein 106b isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BX950195
    UniProtKB/TrEMBL
    A0A8M1N4C8, Q1LUD6
    Related
    ENSDARP00000075906.4, ENSDART00000081465.7
    Conserved Domains (1) summary
    pfam15794
    Location:76 → 353
    CCDC106; Coiled-coil domain-containing protein 106

  2. NM_001312892.1 → NP_001299821.1  coiled-coil domain-containing protein 106b isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR which results in the use of a downstream AUG compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    BX950195
    UniProtKB/TrEMBL
    A0A0R4IQP1, A0A8M1P6Z8
    Related
    ENSDARP00000136964.2, ENSDART00000171232.2
    Conserved Domains (1) summary
    pfam15794
    Location:58 → 335
    CCDC106; Coiled-coil domain-containing protein 106

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    10325367..10331024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468054.1 → XP_021323729.1  coiled-coil domain containing 106b isoform X1

    UniProtKB/TrEMBL
    A0A8M9PGD9
    Conserved Domains (1) summary
    pfam15794
    Location:128 → 232
    CCDC106; Coiled-coil domain-containing protein 106
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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