igf2bp3 insulin like growth factor 2 mRNA binding protein 3 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: igf2bp3provided by Xenbase
Official Full Name: insulin like growth factor 2 mRNA binding protein 3provided by Xenbase
Primary source: Xenbase:XB-GENE-483018
See related: Ensembl:ENSXETG00000007396
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: B3; IMP; imp3; koc1; vera; imp-3; vg1rbp; vickz3; Vg1-RBP; igf2bp3-a; igf2bp3-b
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 6

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	6	NC_030682.2 (40262085..40327974, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	6	NC_030682.1 (34732940..34796135)

Chromosome 6 - NC_030682.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA 3'-UTR binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within germ cell development	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within germ cell migration	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of embryonic development	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of translation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within sex determination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: insulin-like growth factor 2 mRNA-binding protein 3

Names: Vg1 RBP

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001017139.2 → NP_001017139.1 insulin-like growth factor 2 mRNA-binding protein 3

See identical proteins and their annotated locations for NP_001017139.1

Status: PROVISIONAL

Source sequence(s)

CR761008

UniProtKB/TrEMBL

A0A8J0PJ32, B0JZ55

Conserved Domains (3) summary

cd00105
Location:289 → 354

KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...

cd12627
Location:1 → 77

RRM1_IGF2BP3; RNA recognition motif 1 in vertebrate insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3)

cd12630
Location:81 → 156

RRM2_IGF2BP3; RNA recognition motif 2 in vertebrate insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

40262085..40327974 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031903400.1 → XP_031759260.1 insulin-like growth factor 2 mRNA-binding protein 3 isoform X1

UniProtKB/TrEMBL

B0JZ55, F6SCY4

Related

ENSXETP00000016106.5, ENSXETT00000016106.5

Conserved Domains (4) summary

cd12630
Location:44 → 119

RRM2_IGF2BP3; RNA recognition motif 2 (RRM2) found in vertebrate insulin-like growth factor 2 mRNA-binding protein 3 (IGF2BP3)

cd22490
Location:170 → 245

KH-I_IGF2BP1_rpt1; first type I K homology (KH) RNA-binding domain found in insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1) and similar proteins

cl00098
Location:248 → 342

KH-I; K homology (KH) RNA-binding domain, type I

cl17169
Location:9 → 40

RRM_SF; RNA recognition motif (RRM) superfamily
XM_031903401.1 → XP_031759261.1 insulin-like growth factor 2 mRNA-binding protein 3 isoform X2

UniProtKB/TrEMBL

A0A8J1JRQ1

Conserved Domains (1) summary

cl00098
Location:128 → 222

KH-I; K homology (KH) RNA-binding domain, type I