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zgc:113050 zgc:113050 [ Danio rerio (zebrafish) ]

Gene ID: 550604, updated on 11-Apr-2024

Summary

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Official Symbol
zgc:113050provided by ZNC
Official Full Name
zgc:113050provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-465
See related
AllianceGenome:ZFIN:ZDB-GENE-050417-465
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See zgc:113050 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (69763169..69775595, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (68991702..69004614, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase Neighboring gene ADP-ribosylation factor-like 6 interacting protein 4 Neighboring gene mitochondrial translation release factor in rescue Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene lysine methyltransferase 5Ab Neighboring gene Rab interacting lysosomal protein-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
gastrula zinc finger protein xLCGF3.1; uncharacterized protein LOC550604; zinc finger protein 721; zinc finger protein 729; zinc finger protein 91

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    69763169..69775595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476699.1 → XP_021332374.1  zinc finger protein 729 isoform X1

    UniProtKB/TrEMBL
    A0A8M9Q508
    Conserved Domains (3) summary
    COG5048
    Location:191 → 598
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:50 → 157
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:531 → 551
    ZF_C2H2; C2H2 Zn finger [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394622.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    143841..146543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021471699.1 → XP_021327374.1  zinc finger protein 721 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PR81
    Conserved Domains (3) summary
    COG5048
    Location:191 → 598
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:50 → 157
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:531 → 551
    ZF_C2H2; C2H2 Zn finger [structural motif]

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395248.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    64066..76176 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474046.1 → XP_021329721.1  gastrula zinc finger protein xLCGF3.1 isoform X3

    UniProtKB/TrEMBL
    A0A8M9Q4G4
    Conserved Domains (2) summary
    COG5048
    Location:61 → 216
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:111 → 131
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_017356396.2 → XP_017211885.2  zinc finger protein 91 isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z0Y9
    Conserved Domains (2) summary
    COG5048
    Location:527 → 916
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:503 → 523
    ZF_C2H2; C2H2 Zn finger [structural motif]

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001017905.1: Suppressed sequence

    Description
    NM_001017905.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: ZNF808 (GeneID:388558).
Nucleotide Protein Strain
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