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LOC5508984 cytidine deaminase [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5508984, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5508984
Gene description
cytidine deaminase
Locus tag
NEMVEDRAFT_v1g211508
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 3 NC_064036.1 (19452528..19453257)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834275.1 (158234..158962, complement)

Chromosome 3 - NC_064036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC5508981 Neighboring gene uncharacterized LOC116616059 Neighboring gene uncharacterized LOC5508988 Neighboring gene transcription initiation factor IIB-like Neighboring gene protein fem-1 homolog B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytidine deamination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytidine deaminase
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064036.1 Reference jaNemVect1.1

    Range
    19452528..19453257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001629525.3 → XP_001629575.1  cytidine deaminase

    See identical proteins and their annotated locations for XP_001629575.1

    UniProtKB/TrEMBL
    A7SFK0
    Conserved Domains (2) summary
    COG0295
    Location:17 → 143
    Cdd; Cytidine deaminase [Nucleotide transport and metabolism]
    cl00269
    Location:19 → 143
    cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
Nucleotide Protein
Heading Accession and Version

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