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grna.1 granulin a, tandem duplicate 1 [ Danio rerio (zebrafish) ]

Gene ID: 553977, updated on 27-Mar-2024

Summary

Official Symbol
grna.1provided by ZNC
Official Full Name
granulin a, tandem duplicate 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-060103-1
See related
Ensembl:ENSDARG00000089362 AllianceGenome:ZFIN:ZDB-GENE-060103-1
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
grn1; zgc:136318
Summary
Predicted to be active in extracellular region. Is expressed in several structures, including digestive system; epidermis; gill; heart; and pleuroperitoneal region. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See grna.1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (40186677..40192168, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (40599557..40605048, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene immune-related, lectin-like receptor 4 Neighboring gene RNA binding motif protein 48 Neighboring gene calaxin Neighboring gene granulin antisense Neighboring gene granulin a, tandem duplicate 2 Neighboring gene cyclin dependent kinase 6

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020802.2NP_001018638.2  granulin 1 precursor

    See identical proteins and their annotated locations for NP_001018638.2

    Status: VALIDATED

    Source sequence(s)
    BC116498, BX510986, EH455318
    UniProtKB/TrEMBL
    A0A2R8QC28, A8E5C4, Q1LWZ1
    Related
    ENSDARP00000051971.6, ENSDART00000051972.7
    Conserved Domains (1) summary
    smart00277
    Location:3989
    GRAN; Granulin

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    40186677..40192168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)