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crygmxl2 crystallin, gamma MX, like 2 [ Danio rerio (zebrafish) ]

Gene ID: 554132, updated on 27-Mar-2024

Summary

Official Symbol
crygmxl2provided by ZNC
Official Full Name
crystallin, gamma MX, like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-401
See related
Ensembl:ENSDARG00000074001 AllianceGenome:ZFIN:ZDB-GENE-050522-401
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7140756; zgc:110021
Summary
Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens. Human ortholog(s) of this gene implicated in cataract; cataract 2 multiple types; cataract 39 multiple types; cataract 4 multiple types; and cataract 7. Orthologous to several human genes including CRYGA (crystallin gamma A); CRYGB (crystallin gamma B); and CRYGC (crystallin gamma C). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See crygmxl2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (30842677..30846055, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (30727775..30731153, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 18 family, member A1 Neighboring gene crystallin, gamma MX Neighboring gene uncharacterized LOC110440147 Neighboring gene transcription factor 7 like 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of eye lens IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in lens development in camera-type eye IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in visual perception IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
crystallin, gamma MX, like 2
Names
crygmxc
crystallin gamma MXc

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024427.2NP_001019598.1  crystallin, gamma MX, like 2

    See identical proteins and their annotated locations for NP_001019598.1

    Status: VALIDATED

    Source sequence(s)
    BC095135, CN501051, CN506249
    UniProtKB/TrEMBL
    A0A8M1N6W1, Q4VBU2
    Related
    ENSDARP00000070462.4, ENSDART00000075983.6
    Conserved Domains (1) summary
    pfam00030
    Location:90171
    Crystall; Beta/Gamma crystallin

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    30842677..30846055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)