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golm2 golgi membrane protein 2 [ Danio rerio (zebrafish) ]

Gene ID: 555654, updated on 27-Mar-2024

Summary

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Official Symbol
golm2provided by ZNC
Official Full Name
golgi membrane protein 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-091130-1
See related
Ensembl:ENSDARG00000074490 AllianceGenome:ZFIN:ZDB-GENE-091130-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
casc4
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GOLM2 (golgi membrane protein 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See golm2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (31338105..31367921)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (31066969..31096771)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene tight junction protein 1a Neighboring gene family with sequence similarity 189 member A1 Neighboring gene uncharacterized LOC103911386 Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b Neighboring gene stereocilin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein CASC4
Names
cancer susceptibility candidate 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    31338105..31367921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005168941.4 → XP_005168998.1  protein CASC4 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BG87, E7FBP9
    Related
    ENSDARP00000101657.2, ENSDART00000114148.5
    Conserved Domains (1) summary
    cl23720
    Location:94 → 196
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. XM_678225.8 → XP_683317.2  protein CASC4 isoform X2

    UniProtKB/TrEMBL
    A0A1D5NSL0, A0A8N7UUL7
    Related
    ENSDARP00000142827.1, ENSDART00000173477.2
    Conserved Domains (1) summary
    cl23720
    Location:94 → 196
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein Strain
Heading Accession and Version

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