hmgn1b high mobility group nucleosome binding domain 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hmgn1bprovided by ZNC
Official Full Name: high mobility group nucleosome binding domain 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-141216-84
See related: Ensembl:ENSDARG00000103919 AllianceGenome:ZFIN:ZDB-GENE-141216-84
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: lncrps25; lnc_rps25; im:7159173; linc-mipep; si:ch73-1a9.3
Summary: Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus. Is expressed in brain; heart; muscle; pectoral fin; and post-vent region. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 10

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (39084229..39087860)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (39140949..39144580)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj57b04.x1 (e-PCR)
- UniSTS:188704

AW184047 (e-PCR)
- UniSTS:205766

fj08a11.x1 (e-PCR)
- UniSTS:188401

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chromatin binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleosomal DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within axonogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in chromatin organization	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within neuron development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of chromatin	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: non-histone chromosomal protein HMG-17; non-histone chromosomal protein HMG-like

Names: TCONS_00009015

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386720.1 → NP_001373649.1 non-histone chromosomal protein HMG-like

Status: VALIDATED

Source sequence(s)

CU633908

UniProtKB/TrEMBL

A0A0R4IBX9, A0A8M2BGK7