c1galt1la core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: c1galt1laprovided by ZNC
Official Full Name: core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-061013-303
See related: Ensembl:ENSDARG00000055585 AllianceGenome:ZFIN:ZDB-GENE-061013-303
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi11c09; c1galt1a; wu:fi11c09; zgc:153355
Summary: Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1; angiogenesis; and kidney development. Predicted to act upstream of or within O-glycan processing. Predicted to be integral component of membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 23

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (28092083..28136944)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (28165542..28210198)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity	ISS Inferred from Sequence or Structural Similarity more info
enables glycosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in O-glycan processing, core 1	IBA Inferred from Biological aspect of Ancestor more info
involved_in angiogenesis	ISS Inferred from Sequence or Structural Similarity more info
involved_in kidney development	ISS Inferred from Sequence or Structural Similarity more info
involved_in protein glycosylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

Names: C1GalT1-A; c1galt1l; core 1 O-glycan T-synthase A; core 1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1-A; core 1 beta1,3-galactosyltransferase 1-A; core 1 beta3-Gal-T-A; core 1 beta3-Gal-T1-A; core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like; core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a; core1 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase 1-A

NP_001070842.1

EC 2.4.1.122

XP_005162312.1

EC 2.4.1.122

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001077374.1 → NP_001070842.1 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

See identical proteins and their annotated locations for NP_001070842.1

Status: PROVISIONAL

Source sequence(s)

BC124666

UniProtKB/Swiss-Prot

Q08BL3

UniProtKB/TrEMBL

B2GPW7

Related

ENSDARP00000053957.5, ENSDART00000053958.7

Conserved Domains (1) summary

cl21608
Location:169 → 292

Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007134.7 Reference GRCz11 Primary Assembly

Range

28092083..28136944

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005162255.4 → XP_005162312.1 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A isoform X1

UniProtKB/TrEMBL

A0A8M2B944, F1QGX4

Related

ENSDARP00000134314.1, ENSDART00000158260.2

Conserved Domains (1) summary

cl21608
Location:169 → 292

Galactosyl_T; Galactosyltransferase