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wu:fb63a08 wu:fb63a08 [ Danio rerio (zebrafish) ]

Gene ID: 559221, updated on 27-Mar-2024

Summary

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Official Symbol
wu:fb63a08provided by ZNC
Official Full Name
wu:fb63a08provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1216
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-1216
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb63a08; Wu:fb63a08 protein-like
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See wu:fb63a08 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
47
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (47276151..47292850)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (47424565..47441082)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100333415 Neighboring gene zonadhesin-like Neighboring gene spore wall protein 2-like Neighboring gene uncharacterized LOC110438126

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. mTOR-related neuropathology in mutant tsc2 zebrafish: Phenotypic, transcriptomic and pharmacological analysis. Scheldeman C, et al. Neurobiol Dis, 2017 Dec. PMID 28888969
  2. Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Webb KJ, et al. Genome Biol, 2009. PMID 19646228, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MAM and LDL-receptor class A domain-containing protein 1; uncharacterized protein LOC559221

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    47276151..47292850
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468039.1 → XP_021323714.1  MAM and LDL-receptor class A domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8M9PGC6
    Conserved Domains (3) summary
    cd06263
    Location:445 → 599
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00832
    Location:3 → 36
    C8; This domain contains 8 conserved cysteine residues
    pfam00629
    Location:1229 → 1384
    MAM; MAM domain, meprin/A5/mu
Nucleotide Protein
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