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plxnb2a.3 plexin b2a, tandem duplicate 3 [ Danio rerio (zebrafish) ]

Gene ID: 561237, updated on 11-Apr-2024

Summary

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Official Symbol
plxnb2a.3provided by ZNC
Official Full Name
plexin b2a, tandem duplicate 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-041210-121
See related
Ensembl:ENSDARG00000079892 AllianceGenome:ZFIN:ZDB-GENE-041210-121
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-183c2.4
Summary
Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including generation of neurons; regulation of GTPase activity; and regulation of cell shape. Predicted to act upstream of or within semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human PLXNB2 (plexin B2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See plxnb2a.3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (14644076..14666726, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (14645321..14667918, complement)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene plexin b2a, tandem duplicate 1 Neighboring gene plexin b2a, tandem duplicate 2 Neighboring gene ATP-binding cassette, sub-family C (CFTR/MRP), member 9 Neighboring gene potassium inwardly rectifying channel subfamily J member 8 Neighboring gene cytidine monophosphate N-acetylneuraminic acid synthetase a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables semaphorin receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC561237

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030156.2 → NP_001025327.1  uncharacterized protein LOC561237 precursor

    Status: PREDICTED

    Source sequence(s)
    BX571719
    UniProtKB/TrEMBL
    A0A8M1N789, Q5RH90
    Related
    ENSDARP00000113132.1, ENSDART00000145737.2
    Conserved Domains (2) summary
    pfam01437
    Location:490 → 533
    PSI; Plexin repeat
    cl15693
    Location:26 → 488
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    14644076..14666726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005164708.4 → XP_005164765.1  uncharacterized protein LOC561237 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BBU5
    Conserved Domains (2) summary
    pfam01437
    Location:522 → 565
    PSI; Plexin repeat
    cl15693
    Location:58 → 520
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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