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pcnx4 pecanex 4 [ Danio rerio (zebrafish) ]

Gene ID: 563650, updated on 27-Mar-2024

Summary

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Official Symbol
pcnx4provided by ZNC
Official Full Name
pecanex 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-070209-185
See related
Ensembl:ENSDARG00000060785 AllianceGenome:ZFIN:ZDB-GENE-070209-185
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
pcnxl4; zgc:158219
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human PCNX4 (pecanex 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See pcnx4 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (31520559..31535511)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (31390109..31405138)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene reticulon 1a Neighboring gene leucine rich repeat containing 9 Neighboring gene dehydrogenase/reductase (SDR family) member 7 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1Aa

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Genetic association analyses highlight biological pathways underlying mitral valve prolapse. Dina C, et al. Nat Genet, 2015 Oct. PMID 26301497, Free PMC Article
  2. Brain transcriptome analysis of a familial Alzheimer's disease-like mutation in the zebrafish presenilin 1 gene implies effects on energy production. Newman M, et al. Mol Brain, 2019 May 3. PMID 31053140, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
pecanex-like protein 4
Names
pecanex homolog protein 4
pecanex-like 4
pecanex-like protein C14orf135 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081574.1 → NP_001075043.1  pecanex-like protein 4

    See identical proteins and their annotated locations for NP_001075043.1

    Status: PROVISIONAL

    Source sequence(s)
    BC133075
    UniProtKB/Swiss-Prot
    A2RUW7
    Related
    ENSDARP00000080453.4, ENSDART00000086018.5
    Conserved Domains (1) summary
    pfam05041
    Location:1071 → 1218
    Pecanex_C; Pecanex protein (C-terminus)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    31520559..31535511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307332.3 → XP_009305607.1  pecanex-like protein 4 isoform X1

    See identical proteins and their annotated locations for XP_009305607.1

    UniProtKB/Swiss-Prot
    A2RUW7
    Conserved Domains (1) summary
    pfam05041
    Location:1071 → 1218
    Pecanex_C; Pecanex protein (C-terminus)

  2. XM_009307333.3 → XP_009305608.1  pecanex-like protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A8M3BEN9
    Conserved Domains (1) summary
    pfam05041
    Location:772 → 919
    Pecanex_C; Pecanex protein (C-terminus)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2RUW7.1 GenPept UniProtKB/Swiss-Prot:A2RUW7

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