U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:dkey-154p10.3 si:dkey-154p10.3 [ Danio rerio (zebrafish) ]

Gene ID: 563659, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
si:dkey-154p10.3provided by ZNC
Official Full Name
si:dkey-154p10.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-380
See related
Ensembl:ENSDARG00000068366 AllianceGenome:ZFIN:ZDB-GENE-070912-380
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc19g04; wu:fc19g04
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:dkey-154p10.3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (32826215..32834446)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (32843028..32851228)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438072 Neighboring gene pre-mRNA processing factor 4Ba Neighboring gene opsin 4.1 Neighboring gene transmembrane protein 53

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein 354C

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    32826215..32834446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_687018.7 → XP_692110.2  zinc finger protein 354C

    UniProtKB/TrEMBL
    A0A8N7TE03, E9QFV5
    Related
    ENSDARP00000122719.1, ENSDART00000143127.3
    Conserved Domains (3) summary
    COG5048
    Location:500 → 632
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:504 → 524
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:572 → 594
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools