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si:ch211-145c1.1 si:ch211-145c1.1 [ Danio rerio (zebrafish) ]

Gene ID: 563686, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch211-145c1.1provided by ZNC
Official Full Name
si:ch211-145c1.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-81
See related
Ensembl:ENSDARG00000042063 AllianceGenome:ZFIN:ZDB-GENE-070912-81
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See si:ch211-145c1.1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (8290628..8296871, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (8312299..8318390, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene myosin XVI Neighboring gene uncharacterized LOC108191363 Neighboring gene si:ch1073-75o15.4 Neighboring gene si:dkey-90l23.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
L-rhamnose-binding lectin CSL3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    8290628..8296871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017357755.2 → XP_017213244.1  L-rhamnose-binding lectin CSL3

    UniProtKB/TrEMBL
    A0A8M6Z8I8, B0S5U6
    Related
    ENSDARP00000120984.1, ENSDART00000139867.3
Nucleotide Protein Strain
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