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znf638 zinc finger protein 638 [ Danio rerio (zebrafish) ]

Gene ID: 563749, updated on 25-Apr-2024

Summary

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Official Symbol
znf638provided by ZNC
Official Full Name
zinc finger protein 638provided by ZNC
Primary source
ZFIN:ZDB-GENE-141216-265
See related
Ensembl:ENSDARG00000104169 AllianceGenome:ZFIN:ZDB-GENE-141216-265
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-212k18.4
Summary
Predicted to enable RNA binding activity. Predicted to be active in nucleus. Orthologous to human ZNF638 (zinc finger protein 638). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See znf638 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
26
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (19625622..19661812, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (19373654..19390386, complement)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene si:ch211-212k18.15 Neighboring gene zgc:194655 Neighboring gene si:ch211-196p9.1 Neighboring gene triokinase/FMN cyclase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of RNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 638
Names
zinc finger protein 638-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    19625622..19661812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021477756.1 → XP_021333431.1  zinc finger protein 638 isoform X3

    UniProtKB/TrEMBL
    A0A8M9QCJ6
    Conserved Domains (4) summary
    smart00451
    Location:2246 → 2280
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:773 → 844
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:941 → 1016
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl26511
    Location:1296 → 2234
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_021477755.1 → XP_021333430.1  zinc finger protein 638 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QHK5
    Conserved Domains (4) summary
    smart00451
    Location:2247 → 2281
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:773 → 844
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cd12716
    Location:942 → 1017
    RRM1_2_NP220; RNA recognition motif 1 and 2 in vertebrate nuclear protein 220 (NP220)
    cl26511
    Location:1297 → 2235
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_021477757.1 → XP_021333432.1  zinc finger protein 638 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IE57, A0A0R4IZ89, A0A8M3B130
    Related
    ENSDARP00000141709.1, ENSDART00000160936.2
    Conserved Domains (4) summary
    smart00451
    Location:2135 → 2169
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:661 → 732
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:830 → 905
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:1185 → 2123
    Neuromodulin_N; Gap junction protein N-terminal region

  4. XM_021477758.1 → XP_021333433.1  zinc finger protein 638 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IE57, A0A0R4IZ89, A0A8M3B130
    Related
    ENSDARP00000132923.2, ENSDART00000163686.2
    Conserved Domains (4) summary
    smart00451
    Location:2135 → 2169
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:661 → 732
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:830 → 905
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:1185 → 2123
    Neuromodulin_N; Gap junction protein N-terminal region

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394683.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    347829..364566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009303099.3 → XP_009301374.1  zinc finger protein 638 isoform X4

    UniProtKB/TrEMBL
    A0A8M3AU39
    Conserved Domains (3) summary
    smart00451
    Location:2134 → 2168
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:661 → 732
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:829 → 904
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_009303097.3 → XP_009301372.1  zinc finger protein 638 isoform X1

    See identical proteins and their annotated locations for XP_009301372.1

    UniProtKB/TrEMBL
    A0A0R4IE57, A0A0R4IZ89, A0A8M3B130
    Conserved Domains (4) summary
    smart00451
    Location:2135 → 2169
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:661 → 732
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:830 → 905
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:1185 → 2123
    Neuromodulin_N; Gap junction protein N-terminal region

  3. XM_009303098.3 → XP_009301373.1  zinc finger protein 638 isoform X1

    See identical proteins and their annotated locations for XP_009301373.1

    UniProtKB/TrEMBL
    A0A0R4IE57, A0A0R4IZ89, A0A8M3B130
    Conserved Domains (4) summary
    smart00451
    Location:2135 → 2169
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:661 → 732
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:830 → 905
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl26511
    Location:1185 → 2123
    Neuromodulin_N; Gap junction protein N-terminal region
Nucleotide Protein Strain
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