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si:dkey-82f1.1 si:dkey-82f1.1 [ Danio rerio (zebrafish) ]

Gene ID: 563917, updated on 27-Mar-2024

Summary

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Official Symbol
si:dkey-82f1.1provided by ZNC
Official Full Name
si:dkey-82f1.1provided by ZNC
Primary source
ZFIN:ZDB-LINCRNAG-030131-2982
See related
Ensembl:ENSDARG00000096850 AllianceGenome:ZFIN:ZDB-LINCRNAG-030131-2982
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:dkey-82f1.1 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
20
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (2545740..2638797, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (2392886..2485407, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene transcriptional enhancer factor TEF-3-like Neighboring gene uncharacterized LOC101887189 Neighboring gene aarF domain containing kinase 2 Neighboring gene Bardet-Biedl syndrome 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
DENN domain-containing protein 2A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    2545740..2638797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470581.1 → XP_021326256.1  DENN domain-containing protein 2A

    UniProtKB/TrEMBL
    A0A8M9PV68
    Related
    ENSDART00000188890.1
    Conserved Domains (3) summary
    smart00801
    Location:890 → 968
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    smart00800
    Location:561 → 653
    uDENN; Domain always found upstream of DENN domain, found in a variety of signalling proteins
    pfam02141
    Location:660 → 841
    DENN; DENN (AEX-3) domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases