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znf839 zinc finger protein 839 [ Danio rerio (zebrafish) ]

Gene ID: 566882, updated on 27-Mar-2024

Summary

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Official Symbol
znf839provided by ZNC
Official Full Name
zinc finger protein 839provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-4936
See related
Ensembl:ENSDARG00000076988 AllianceGenome:ZFIN:ZDB-GENE-030131-4936
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fe11g03; wu:fe11g03
Summary
Predicted to enable metal ion binding activity. Orthologous to human ZNF839 (zinc finger protein 839). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See znf839 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (31624122..31639893, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (31606395..31622987, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene ADP-ribosylserine hydrolase Neighboring gene cyclin dependent kinase 2 interacting protein Neighboring gene uncharacterized LOC110438044 Neighboring gene visual system homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 839

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423822.1 → NP_001410751.1  zinc finger protein 839

    Status: VALIDATED

    Source sequence(s)
    CR628322, CT027705
    UniProtKB/TrEMBL
    A0A8N7UV57, X1WCH5

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    31624122..31639893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_690166.8 → XP_695258.2  zinc finger protein 839 isoform X1

    UniProtKB/TrEMBL
    X1WCH5
    Related
    ENSDARP00000127918.1, ENSDART00000154196.2
    Conserved Domains (1) summary
    pfam15961
    Location:304 → 958
    DUF4764; Domain of unknown function (DUF4764)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394997.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    526208..531397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473206.1 → XP_021328881.1  zinc finger protein 839 isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q2L8
    Conserved Domains (1) summary
    pfam15961
    Location:1 → 310
    DUF4764; Domain of unknown function (DUF4764)

  2. XM_021473207.1 → XP_021328882.1  zinc finger protein 839 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PCW3
Nucleotide Protein Strain
Heading Accession and Version

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