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thap4 THAP domain containing 4 [ Danio rerio (zebrafish) ]

Gene ID: 567037, updated on 11-Apr-2024

Summary

Official Symbol
thap4provided by ZNC
Official Full Name
THAP domain containing 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-5
See related
Ensembl:ENSDARG00000077323 AllianceGenome:ZFIN:ZDB-GENE-070912-5
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
nitrobindin; si:ch211-105d4.5
Summary
Orthologous to human THAP4 (THAP domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See thap4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (22653123..22659453, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (22997472..23003816, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 25b Neighboring gene BCL2 family apoptosis regulator BOK b Neighboring gene zgc:161973 Neighboring gene alanine--glyoxylate and serine--pyruvate aminotransferase b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
THAP domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128736.3NP_001122208.1  THAP domain-containing protein 4

    See identical proteins and their annotated locations for NP_001122208.1

    Status: VALIDATED

    Source sequence(s)
    BC162373, BX897733, EH478746
    UniProtKB/TrEMBL
    B0S7M2, B3DGE9
    Related
    ENSDARP00000104190.2, ENSDART00000115025.3
    Conserved Domains (1) summary
    pfam08768
    Location:14167
    DUF1794; Domain of unknown function (DUF1794)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    22653123..22659453 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)