U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

hmgn7 high mobility group nucleosomal binding domain 7 [ Danio rerio (zebrafish) ]

Gene ID: 567263, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
hmgn7provided by ZNC
Official Full Name
high mobility group nucleosomal binding domain 7provided by ZNC
Primary source
ZFIN:ZDB-GENE-061215-23
See related
Ensembl:ENSDARG00000062326 AllianceGenome:ZFIN:ZDB-GENE-061215-23
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb74a08; wu:fb74a08; zgc:158409
Summary
Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See hmgn7 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (22969565..22972775)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (22465765..22468975)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:ch211-26b3.4 Neighboring gene si:dkey-237j10.2 Neighboring gene bromodomain and WD repeat domain containing 3 Neighboring gene charged multivesicular body protein 1B

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC158409

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chromatin organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
high mobility group nucleosomal binding domain 7; nonhistone chromosomal protein HMG-14A-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080033.2 → NP_001073502.1  high mobility group nucleosomal binding domain 7

    See identical proteins and their annotated locations for NP_001073502.1

    Status: VALIDATED

    Source sequence(s)
    BC128863, BI984515
    UniProtKB/TrEMBL
    A1A5Y7, A8E5A3
    Related
    ENSDARP00000084425.4, ENSDART00000089992.6
    Conserved Domains (1) summary
    pfam01101
    Location:1 → 80
    HMG14_17; HMG14 and HMG17

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    22969565..22972775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165181.2 → XP_005165238.1  nonhistone chromosomal protein HMG-14A-like isoform X1

    UniProtKB/TrEMBL
    A0A8M2BCE7, E9QI01
    Related
    ENSDARP00000113935.1, ENSDART00000145477.2
    Conserved Domains (1) summary
    pfam01101
    Location:2 → 92
    HMG14_17; HMG14 and HMG17

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394574.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    197367..200578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Tools