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crybg2 crystallin beta-gamma domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 569677, updated on 27-Mar-2024

Summary

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Official Symbol
crybg2provided by ZNC
Official Full Name
crystallin beta-gamma domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-531
See related
AllianceGenome:ZFIN:ZDB-GENE-130530-531
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
aim1l
Summary
Orthologous to human CRYBG2 (crystallin beta-gamma domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See crybg2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
23
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (48215597..48287580)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (48499587..48540121)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:ch1073-366l7.1 Neighboring gene bloodthirsty-related gene family, member 30 Neighboring gene PR domain containing 1b, with ZNF domain Neighboring gene si:ch73-359m17.11 Neighboring gene si:ch73-359m17.9 Neighboring gene annexin A14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Expression of patched, prdm1 and engrailed in the lamprey somite reveals conserved responses to Hedgehog signaling. Hammond KL, et al. Evol Dev, 2009 Jan-Feb. PMID 19196331
  2. Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes. Sun XJ, et al. PLoS One, 2008 Jan 30. PMID 18231586, Free PMC Article
  3. Gene-expression analysis of hair cell regeneration in the zebrafish lateral line. Jiang L, et al. Proc Natl Acad Sci U S A, 2014 Apr 8. PMID 24706903, Free PMC Article
  4. Single cell transcriptomics of the developing zebrafish lens and identification of putative controllers of lens development. Farnsworth DR, et al. Exp Eye Res, 2021 May. PMID 33705730, Free PMC Article
  5. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein prdm1b
Names
crystallin beta-gamma domain containing 1, like
zmp:0000000528

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    48215597..48287580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009294480.3 → XP_009292755.1  uncharacterized protein prdm1b

    UniProtKB/TrEMBL
    A0A8M3AL91
    Conserved Domains (4) summary
    pfam00030
    Location:2181 → 2268
    Crystall; Beta/Gamma crystallin
    pfam00652
    Location:2547 → 2674
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam14988
    Location:1056 → 1230
    DUF4515; Domain of unknown function (DUF4515)
    cl23784
    Location:2608 → 2677
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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