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ncdn neurochondrin [ Danio rerio (zebrafish) ]

Gene ID: 571005, updated on 11-Apr-2024

Summary

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Official Symbol
ncdnprovided by ZNC
Official Full Name
neurochondrinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061220-6
See related
Ensembl:ENSDARG00000098544 AllianceGenome:ZFIN:ZDB-GENE-061220-6
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be involved in neuron projection development and regulation of neuronal synaptic plasticity. Predicted to be located in postsynapse. Predicted to be active in dendrite. Orthologous to human NCDN (neurochondrin). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (47460664..47476458, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (47902320..47918189, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit beta 2 Neighboring gene transcription factor AP-2 epsilon Neighboring gene zgc:114119 Neighboring gene exostoses (multiple) 1c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in neuron projection development IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of neuronal synaptic plasticity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in dendrite IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
neurochondrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    47460664..47476458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002667083.3 → XP_002667129.1  neurochondrin

    UniProtKB/TrEMBL
    A0A0R4ILN3, A0A8M1RMX7
    Related
    ENSDARP00000134745.1, ENSDART00000165688.3
    Conserved Domains (1) summary
    pfam05536
    Location:27 → 579
    Neurochondrin; Neurochondrin
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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