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Zfp939 zinc finger protein 939 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690136, updated on 29-Feb-2024

Summary

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Symbol
Zfp939provided by RGD
Full Name
zinc finger protein 939provided by RGD
Primary source
RGD:1584032
See related
Ensembl:ENSRNOG00000064970 AllianceGenome:RGD:1584032
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Zfp975; RGD1584023
Expression
Biased expression in Brain (RPKM 35.1), Liver (RPKM 33.0) and 9 other tissues See more
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Genomic context

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See Zfp939 in Genome Data Viewer
Location:
1q21
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (100254027..100278418)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (91128356..91142632)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (95423646..95437146)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 470 Neighboring gene caspase activity and apoptosis inhibitor 1, pseudogene 1 Neighboring gene family with sequence similarity 32, member A like 1 Neighboring gene uncharacterized LOC102548014 Neighboring gene uncharacterized LOC134485114 Neighboring gene uncharacterized LOC134485115

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 939; zinc finger protein OZF-like
Names
zinc finger protein 33B-like
zinc finger protein 975

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    100254027..100278418
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006228931.5 → XP_006228993.1  zinc finger protein OZF-like isoform X1

    See identical proteins and their annotated locations for XP_006228993.1

    UniProtKB/TrEMBL
    A0A0G2K1H6
    Related
    ENSRNOP00000071844.2
    Conserved Domains (5) summary
    smart00349
    Location:4 → 63
    KRAB; krueppel associated box
    COG5048
    Location:208 → 531
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:419 → 439
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 43
    KRAB; KRAB box
    pfam13465
    Location:238 → 260
    zf-H2C2_2; Zinc-finger double domain

  2. XM_039100879.2 → XP_038956807.1  zinc finger protein OZF-like isoform X3

    Conserved Domains (3) summary
    smart00349
    Location:4 → 63
    KRAB; krueppel associated box
    COG5048
    Location:170 → 493
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:381 → 401
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_017590076.3 → XP_017445565.1  zinc finger protein OZF-like isoform X2

RNA

  1. XR_010062993.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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